tomas.lrt.summarize2DE

tomas.lrt.summarize2DE(gs_df, lrt_df, group, reference=None, pval_cutoff=0.05, logFC_cutoff=0, minCells=5)

Compare and summarize two DE results.

Parameters:

  • gs_df (pandas.DataFrame) – Global-scaling DE table.

  • lrt_df (pandas.DataFrame) – LRT-based DE table of TOMAS.

  • group (str) – The category of droplet to compare with reference.

  • pval_cutoff (float, optional) – Significance level. The default is 0.05.

  • logFC_cutoff (float, optional) – Cutoff of log2-foldchange to tell the DE significance. The default is 0.

Returns:

de_df – Table fusing two input DE resutls.

Return type:

pandas.DataFrame